Peter Karp の pathway tool instruction

• Pathway tools user's guide http://bioinformatics.ai.sri.com/ptools/installation-guide/released/
• BioVelo http://biocyc.org/bioveloLanguage.html
• とりあえず ここ見りゃいいぽい http://bioinformatics.ai.sri.com/ptools/

• Given:
  • A PGDB for an organism
  • A set of initial metabolites

• Infer:
  • What set of products can be systhesized

• • version 12.5 が Sep にリリースされる
• nimbleScanの結果を用いたgraph tracks

• PerlCyc
• JavaCyc

• plug-inで貢献が可能

• pathway tools APIs
  • APIs
    • Lisp
      • database query and
    • perlcyc
    • javacyc

• usage hints
  • submit pathways to MetaCyc (author credit system)
  • Upgrade at least once a year

• Question
  • Why Lisp?